منابع مشابه
Bioinformatics for RNA‐Seq Data Analysis
While RNA sequencing (RNA‐seq) has become increasingly popular for transcrip‐ tome profiling, the analysis of the massive amount of data generated by large‐scale RNA‐seq still remains a challenge. RNA‐seq data analyses typically consist of (1) accurate mapping of millions of short sequencing reads to a reference genome, including the identification of splicing events; (2) quantifying expression...
متن کاملRNA-Seq analysis in MeV
SUMMARY RNA-Seq is an exciting methodology that leverages the power of high-throughput sequencing to measure RNA transcript counts at an unprecedented accuracy. However, the data generated from this process are extremely large and biologist-friendly tools with which to analyze it are sorely lacking. MultiExperiment Viewer (MeV) is a Java-based desktop application that allows advanced analysis o...
متن کاملGiardia lamblia Transcriptome Analysis Using TSS-Seq and RNA-Seq
Giardia lamblia is a protozoan parasite that is found worldwide and has both medical and veterinary importance. We applied the transcription start sequence (TSS-seq) and RNA sequence (RNA-seq) techniques to study the transcriptome of the assemblage A WB strain trophozoite. We identified 8000 transcription regions (TR) with significant transcription. Of these regions, 1881 TRs were more than 500...
متن کاملRNA-Seq Bayesian Network Exploration of Immune System in Bovine
Background: The stress is one of main factors effects on production system. Several factors (both genetic and environmental elements) regulate immune response to stress. Objectives: In order to determine the major immune system regulatory genes underlying stress responses, a learning Bayesian network approach for those regulatory genes was applied to RNA-...
متن کاملComputational analysis of bacterial RNA-Seq data
Recent advances in high-throughput RNA sequencing (RNA-seq) have enabled tremendous leaps forward in our understanding of bacterial transcriptomes. However, computational methods for analysis of bacterial transcriptome data have not kept pace with the large and growing data sets generated by RNA-seq technology. Here, we present new algorithms, specific to bacterial gene structures and transcrip...
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ژورنال
عنوان ژورنال: Current Protocols in Molecular Biology
سال: 2018
ISSN: 1934-3639
DOI: 10.1002/cpmb.68